Today in biology class we will be discussing some of these clues, including the presence of vestigial organs. These are structures that modern species possess but really don't serve much of a purpose. (The human appendix and tailbone are classic examples.) But while these structures might not be useful to the organisms that possess them, they can help us to draw evolutionary relationships.*
*The appendix is what's left of our cecum, which is an organ that many mammals use to digest the tough fibers in grass and other plants...the tailbone also supports the idea that humans are descended from an ancestor common to all mammals.
Here's a link to an interesting website that details some of the vestigial organs found in different species. (Hat tip to Mrs. Gingrich for sharing this link.)